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KMID : 0985420240460010055
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Laboratory Medicine and Quality Assurance
2024 Volume.46 No. 1 p.55 ~ p.59
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CYP3A5 rs776746 Genotyping by SYBR Green- Based Real-Time Multiplex Polymerase Chain Reaction Combined with Melting Curve Analysis Using Tm-Shift Method
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Park Geon
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Abstract
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Background: Cytochrome P450 3A subfamily members (CYP3A5) affects drug reactions and susceptibility to diseases. The homozygotic variant rs776746 (CYP3A5 *3/*3; NM_000777.5:c.219-237A>G) genotype is a nonexpressor of CYP3A5 and metabolizes CYP3A5 substrates more slowly than CYP3A5- expressor genotypes (CYP3A5 *1/*1 and *1/*3). A rapid and reliable CYP3A5 genotyping is necessary to reduce the risk of adverse drug reactions.
Methods: A total of 101 randomly collected blood samples from hospitalized patients between May 2022 and December 2022 were used to evaluate this rapid CYP3A5 genotyping technique. One allele-nonspecific forward primer and two allele-specific reverse primers (a rs776746 G allele-specific primer with GC-rich sequences and a rs776746 A allele-specific primer without GCrich sequences) were used for CYP3A5 genotyping. We performed Sanger sequencing to confirm the results of real-time multiplex allele-specific polymerase chain reaction (PCR) and melting curve analysis.
Results: The duration of the analysis of the CYP3A5 genotyping, except DNA extraction, was approximately 1.5 hours. The mean melting temperatures were 79.1℃ and 75.1℃, which were characteristic of rs776746 G allelespecific amplicon and rs776746 A allele-specific amplicon, respectively. Frequencies of CYP3A5 *1/*1, CYP3A5 *1/*3, and CYP3A5 *3/*3 were 7 (6.9%), 40 (39.6%), and 54 (53.5%) in 101 samples, respectively. The concordance rate between the real-time PCR combined with melting curve analysis and Sanger sequencing was 100%.
Conclusions: CYP3A5 genotyping by SYBR Green-based real-time multiplex PCR combined with melting curve analysis using three unlabeled primers including the melting temperature-shift primer in a single tube is a rapid and reliable technique for routine laboratory testing.
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KEYWORD
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CYP3A5, Genotyping, Real-time polymerase chain reaction
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